Jonathan Allen began his musical studies at the University of Northern Colorado with Edwin “Buddy” Baker in the Fall of 1997. He continued his education at the same institution with Dr. Nat Wickham. He received his Bachelor of Music in Trombone Performance in 2005. In May 2007 he was awarded a Masters Degree in Trombone Performance from the University where he studied with Larry Zalkind. He is currently in his first year of study at the University of Iowa where is he an Iowa Performance Fellow and pursuing the Doctorate of Musical Arts in Trombone Performance and Pedagogy.

Jonathan has had the opportunity to perform in a wide variety of settings. He has performed with the Utah Symphony, Utah Opera, Quad City Symphony Orchestra, Orchestra at Temple Square, Greeley Philharmonic, Cheyenne Symphony, Boulder Philharmonic, Fort Collins Symphony, SLAJO (Salt Lake Alternative Jazz Orchestra) and The Temptations. As a member of UNC Jazz Lab 1 he has performed under the direction of Gene Aitken and Dana Landry. During this time, UNC performed with the following artists: Maria Schneider, Chuck Dotas, Bob Brookmeyer, Kenny Wheeler, and Pete Fountain. In the winter of 2000, UNC Jazz Lab 1 was invited to perform at the IAJE (International Association of Jazz Educators) convention in New Orleans. In 2005 UNC Lab 1 won the Downbeat Magazine Award for the Best College Large Jazz Ensemble. Jonathan can be heard on "Alive XVII" with the UNC Jazz Lab 1, under the direction of Gene Aitken and several recordings with the Orchestra at Temple Square and the Mormon Tabernacle Orchestra under the direction of Craig Jessop.

While a member of the UNC Symphony Orchestra, the USO won the Downbeat Magazine award for best U.S. College Orchestra twice (2000, 2004). In his time with UNC Jazz Lab 1, the group won two Downbeat Magazine Awards for "Best College Big Band". Jonathan is a currently an Iowa Performance Fellow, a prestigious award offered to only two incoming doctoral students per year at the University of Iowa.

His teachers include Dr. David Gier, Larry Zalkind, Dr. Donn Schaefer, Dr. Nat Wickham, and Buddy Baker. He has performed in master classes with Michael Mulcahy, Ralph Sauer, David Vining, and Dr. Will Kimball.